Transcript: TOLLIP-AS1:3

Basic information

LNCipedia transcript ID: TOLLIP-AS1:3 
HGNC Gene Symbol: TOLLIP-AS1    
HGNC Full Gene Name: TOLLIP antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000255153
Ensembl Transcript ID: ENST00000530897
Location (hg38): chr11:1309769-1310707
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 939 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530897.1; CTD-2245O6.1-001; OTTHUMT00000388546.1
Alternative gene names: ENSG00000255153.1; CTD-2245O6.1; OTTHUMG00000166230.1; TOLLIP-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 122.7911 coding 
CPAT coding probability 15.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TOLLIP-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MUC5B-2:1
4.0 TOLLIP-AS1:3
4.1 TOLLIP-AS1:3
5.0 TOLLIP-AS1:3
5.1 TOLLIP-AS1:3
5.2 TOLLIP-AS1:3