Transcript: TPM1-AS:9

Basic information

LNCipedia transcript ID: TPM1-AS:9 
HGNC Gene Symbol: TPM1-AS    
HGNC Full Gene Name: TPM1 antisense RNA
Ensembl Gene ID: ENSG00000259498
Ensembl Transcript ID: ENST00000560903
Location (hg38): chr15:63047694-63049248
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1410 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560903.1; RP11-244F12.3-002; OTTHUMT00000417736.1; NONHSAT046589
Alternative gene names: ENSG00000259498.1; RP11-244F12.3; OTTHUMG00000172299.1; AC079328.2; TPM1-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.338 non-coding 
CPAT coding probability 93.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPM1-AS:9 yes no no no

Available literature

  1. Huang (2017), Natural antisense transcript TPM1-AS regulates the alternative splicing of tropomyosin I through an interaction with RNA-binding motif protein 4., Int. J. Biochem. Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS27L-2:2
4.0 lnc-RPS27L-2:2
4.1 lnc-RPS27L-2:2
5.0 lnc-RPS27L-2:2
5.1 TPM1-AS:5
5.2 TPM1-AS:9