Transcript: TPT1-AS1:16

Basic information

LNCipedia transcript ID: TPT1-AS1:16 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45343452-45343752
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT033574; FPKM1_group_7797_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.608 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:16 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2F2-2:27
4.0 TPT1-AS1:16
4.1 TPT1-AS1:16
5.0 TPT1-AS1:16
5.1 TPT1-AS1:16
5.2 TPT1-AS1:16