Transcript: TPT1-AS1:24

Basic information

LNCipedia transcript ID: TPT1-AS1:24 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45374934-45381162
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2372 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021548; ENST00000434849; ENST00000434849.1; TPT1-AS1-009; OTTHUMT00000044770.1; NONHSAT033587
Alternative gene names: XLOC_010376; linc-COG3-1; ENSG00000170919; XXyac-R12DG2.2; ENSG00000170919.9; TPT1-AS1; OTTHUMG00000016851.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1926 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:24 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:18
3.1 lnc-GTF2F2-2:18
4.0 TPT1-AS1:24
4.1 TPT1-AS1:24
5.0 TPT1-AS1:24
5.1 TPT1-AS1:24
5.2 TPT1-AS1:24