Transcript: TPT1-AS1:25

Basic information

LNCipedia transcript ID: TPT1-AS1:25 
HGNC Gene Symbol: TPT1-AS1    
HGNC Full Gene Name: TPT1 antisense RNA 1
Ensembl Gene ID: ENSG00000170919
Ensembl Transcript ID: ENST00000434849
Location (hg38): chr13:45374934-45378616
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2369 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033586; ENST00000434849.2
Alternative gene names: ENSG00000170919.11; TPT1-AS1; ENSG00000170919.15;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1926 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:25 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2F2-2:29
4.0 TPT1-AS1:25
4.1 TPT1-AS1:25
5.0 TPT1-AS1:25
5.1 TPT1-AS1:25
5.2 TPT1-AS1:25