Transcript: TPT1-AS1:3

Basic information

LNCipedia transcript ID: TPT1-AS1:3 
HGNC Gene Symbol: TPT1-AS1    
HGNC Full Gene Name: TPT1 antisense RNA 1
Ensembl Gene ID: ENSG00000170919
Ensembl Transcript ID: ENST00000517509
Location (hg38): chr13:45341345-45393413
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3456 bp
Exons: 11
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517509.5
Alternative gene names: ENSG00000170919.15; TPT1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.3346 non-coding 
CPAT coding probability 76.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:3 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TPT1-AS1:3
4.1 TPT1-AS1:3
5.0 TPT1-AS1:3
5.1 TPT1-AS1:3
5.2 TPT1-AS1:3