Transcript: TPT1-AS1:40

Basic information

LNCipedia transcript ID: TPT1-AS1:40 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45389736-45391273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 516 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA349:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.0634 non-coding 
CPAT coding probability 5.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:40 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TPT1-AS1:40
4.1 TPT1-AS1:40
5.0 TPT1-AS1:40
5.1 TPT1-AS1:40
5.2 TPT1-AS1:40