Transcript: TPT1-AS1:45

Basic information

LNCipedia transcript ID: TPT1-AS1:45 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45341353-45391483
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1518 bp
Exons: 11
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000170919.11|ENST00000517509.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.3346 non-coding 
CPAT coding probability 63.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:45 yes no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TPT1-AS1:45
5.0 TPT1-AS1:45
5.1 TPT1-AS1:45
5.2 TPT1-AS1:45