Transcript: TPT1-AS1:59

Basic information

LNCipedia transcript ID: TPT1-AS1:59 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45341592-45370330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000170919.11|ENST00000520924.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.6261 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:59 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TPT1-AS1:59
5.0 TPT1-AS1:59
5.1 TPT1-AS1:59
5.2 TPT1-AS1:59