Transcript: TPT1-AS1:66

Basic information

LNCipedia transcript ID: TPT1-AS1:66 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45344419-45395950
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5520 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000170919.11|HBMT00000382418.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.7684 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:66 yes no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TPT1-AS1:66
5.0 TPT1-AS1:66
5.1 TPT1-AS1:66
5.2 TPT1-AS1:66