Transcript: TRAF3IP2-AS1:11

Basic information

LNCipedia transcript ID: TRAF3IP2-AS1:11 
HGNC Gene Symbol: TRAF3IP2-AS1    
HGNC Full Gene Name: TRAF3IP2 antisense RNA 1
Ensembl Gene ID: ENSG00000231889
Ensembl Transcript ID: ENST00000420651
Location (hg38): chr6:111483558-111503511
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 324 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420651; ENST00000420651.2; TRAF3IP2-AS1-010; OTTHUMT00000382630.1; NONHSAT114471
Alternative gene names: ENSG00000231889; TRAF3IP2-AS1; ENSG00000231889.2; OTTHUMG00000015378.2; ENSG00000231889.3; ENSG00000231889.7; C6UAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.6808 non-coding 
CPAT coding probability 8.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAF3IP2-AS1:11 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1919-3:6
3.1 lnc-KIAA1919-3:6
4.0 TRAF3IP2-AS1:11
4.1 TRAF3IP2-AS1:11
5.0 TRAF3IP2-AS1:11
5.1 TRAF3IP2-AS1:11
5.2 TRAF3IP2-AS1:11