Transcript: TRAF3IP2-AS1:23

Basic information

LNCipedia transcript ID: TRAF3IP2-AS1:23 
LNCipedia gene ID: TRAF3IP2-AS1
Location (hg38): chr6:111576318-111598508
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 824 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT114483
Alternative gene names: C6UAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.3558 non-coding 
CPAT coding probability 5.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAF3IP2-AS1:23 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1919-3:21
4.0 TRAF3IP2-AS1:23
4.1 TRAF3IP2-AS1:23
5.0 TRAF3IP2-AS1:23
5.1 TRAF3IP2-AS1:23
5.2 TRAF3IP2-AS1:23