Transcript: TRAF3IP2-AS1:45

Basic information

LNCipedia transcript ID: TRAF3IP2-AS1:45 
LNCipedia gene ID: TRAF3IP2-AS1
Location (hg38): chr6:111483537-111503611
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1043 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231889.3|ENST00000440001.2
Alternative gene names: C6UAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -199.9632 non-coding 
CPAT coding probability 5.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAF3IP2-AS1:45 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRAF3IP2-AS1:45
5.0 TRAF3IP2-AS1:45
5.1 TRAF3IP2-AS1:45
5.2 TRAF3IP2-AS1:45