Transcript: TRAF3IP2-AS1:49

Basic information

LNCipedia transcript ID: TRAF3IP2-AS1:49 
LNCipedia gene ID: TRAF3IP2-AS1
Location (hg38): chr6:111483591-111594403
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 398 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231889.3|FTMT22300020121.1
Alternative gene names: C6UAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -151.3497 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAF3IP2-AS1:49 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRAF3IP2-AS1:49
5.0 TRAF3IP2-AS1:49
5.1 TRAF3IP2-AS1:49
5.2 TRAF3IP2-AS1:49