Transcript: TRAF3IP2-AS1:5

Basic information

LNCipedia transcript ID: TRAF3IP2-AS1:5 
LNCipedia gene ID: TRAF3IP2-AS1
RefSeq ID: NR_034110
Location (hg38): chr6:111483472-111578180
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2195 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT114468; NR_034110; NR_034110.1
Alternative gene names: C6UAS; TRAF3IP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0944 non-coding 
CPAT coding probability 18.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAF3IP2-AS1:5 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1919-3:15
4.0 TRAF3IP2-AS1:5
4.1 TRAF3IP2-AS1:5
5.0 TRAF3IP2-AS1:5
5.1 TRAF3IP2-AS1:5
5.2 TRAF3IP2-AS1:5