Transcript: TRAM2-AS1:11

Basic information

LNCipedia transcript ID: TRAM2-AS1:11 
HGNC Gene Symbol: TRAM2-AS1    
HGNC Full Gene Name: TRAM2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000225791
Ensembl Transcript ID: ENST00000453216
Location (hg38): chr6:52577485-52579527
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 664 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453216; ENST00000453216.1; RP1-180E22.3-001; OTTHUMT00000040909.1; NONHSAT113131
Alternative gene names: ENSG00000225791; RP1-180E22.3; ENSG00000225791.1; OTTHUMG00000014849.1; ENSG00000225791.2; TRAM2-AS1; ENSG00000225791.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.0173 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:11 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFHC1-1:1
3.1 lnc-EFHC1-2:1
4.0 TRAM2-AS1:11
4.1 TRAM2-AS1:11
5.0 TRAM2-AS1:11
5.1 TRAM2-AS1:11
5.2 TRAM2-AS1:11