Transcript: TRAM2-AS1:13

Basic information

LNCipedia transcript ID: TRAM2-AS1:13 
HGNC Gene Symbol: TRAM2-AS1    
HGNC Full Gene Name: TRAM2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000225791
Ensembl Transcript ID: ENST00000606558
Location (hg38): chr6:52578146-52582932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606558.1; ENST00000606558.5
Alternative gene names: ENSG00000225791.2; TRAM2-AS1; ENSG00000225791.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.0192 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:13 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFHC1-2:9
4.0 TRAM2-AS1:13
4.1 TRAM2-AS1:13
5.0 TRAM2-AS1:13
5.1 TRAM2-AS1:13
5.2 TRAM2-AS1:13