Transcript: TRAM2-AS1:26

Basic information

LNCipedia transcript ID: TRAM2-AS1:26 
LNCipedia gene ID: TRAM2-AS1
Location (hg38): chr6:52577294-52583994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1725 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225791.2|HBMT00001233262.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.0192 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:26 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRAM2-AS1:26
5.0 TRAM2-AS1:26
5.1 TRAM2-AS1:26
5.2 TRAM2-AS1:26