Transcript: TRDN-AS1:26

Basic information

LNCipedia transcript ID: TRDN-AS1:26 
LNCipedia gene ID: TRDN-AS1
Location (hg38): chr6:123439594-123472853
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3532 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT114771
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.9953 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TRDN-AS1:26 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:7
4.0 lnc-NKAIN2-1:7
4.1 lnc-NKAIN2-1:7
5.0 lnc-NKAIN2-1:7
5.1 TRDN-AS1:6
5.2 TRDN-AS1:26