Transcript: TRDN-AS1:30

Basic information

LNCipedia transcript ID: TRDN-AS1:30 
HGNC Gene Symbol: TRDN-AS1    
HGNC Full Gene Name: TRDN antisense RNA 1
Ensembl Gene ID: ENSG00000235535
Ensembl Transcript ID: ENST00000427828
Location (hg38): chr6:123439642-123468930
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 251 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427828.1; RP11-532N4.2-002; OTTHUMT00000042048.1; ENST00000427828.5
Alternative gene names: ENSG00000235535.1; RP11-532N4.2; OTTHUMG00000015496.1; ENSG00000235535.3; ENSG00000235535.7; AL445259.1; TRDN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:30 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:2
4.0 lnc-NKAIN2-1:2
4.1 lnc-NKAIN2-1:2
5.0 lnc-NKAIN2-1:2
5.1 TRDN-AS1:10
5.2 TRDN-AS1:30