Transcript: TRDN-AS1:31

Basic information

LNCipedia transcript ID: TRDN-AS1:31 
HGNC Gene Symbol: TRDN-AS1    
HGNC Full Gene Name: TRDN antisense RNA 1
Ensembl Gene ID: ENSG00000235535
Ensembl Transcript ID: ENST00000587049
Location (hg38): chr6:123439678-123463072
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT114773; ENST00000587049.1; ENST00000587049.5
Alternative gene names: ENSG00000235535.3; RP11-532N4.2; ENSG00000235535.7; AL445259.1; TRDN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.1413 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:31 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:8
4.0 lnc-NKAIN2-1:8
4.1 lnc-NKAIN2-1:8
5.0 lnc-NKAIN2-1:8
5.1 TRDN-AS1:11
5.2 TRDN-AS1:31