Transcript: TRDN-AS1:38

Basic information

LNCipedia transcript ID: TRDN-AS1:38 
HGNC Gene Symbol: TRDN-AS1    
HGNC Full Gene Name: TRDN antisense RNA 1
Ensembl Gene ID: ENSG00000235535
Ensembl Transcript ID: ENST00000625262
Location (hg38): chr6:123439706-123510241
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1095 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625262.2
Alternative gene names: ENSG00000235535.7; RP11-532N4.2; AL445259.1; TRDN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -95.8797 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:38 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NKAIN2-1:17
4.1 lnc-NKAIN2-1:17
5.0 lnc-NKAIN2-1:17
5.1 TRDN-AS1:18
5.2 TRDN-AS1:38