Transcript: TRG-AS1:1

Basic information

LNCipedia transcript ID: TRG-AS1:1 
LNCipedia gene ID: TRG-AS1
Location (hg38): chr7:38308140-38345162
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3478 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003tgp_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1087 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STARD3NL-1:2
4.0 TRG-AS1:1
4.1 TRG-AS1:1
5.0 TRG-AS1:1
5.1 TRG-AS1:1
5.2 TRG-AS1:1