Transcript: TRHDE-AS1:1

Basic information

LNCipedia transcript ID: TRHDE-AS1:1 
LNCipedia gene ID: TRHDE-AS1
Location (hg38): chr12:72273452-72274907
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000552396; ENST00000552396.1; AC087886.1-004; OTTHUMT00000405388.1; NONHSAT029468
Alternative gene names: ENSG00000236333; AC087886.1; ENSG00000236333.2; OTTHUMG00000150370.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -292.8771 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRHDE-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-2:1
3.1 lnc-ZFC3H1-6:1
4.0 TRHDE-AS1:1
4.1 TRHDE-AS1:1
5.0 TRHDE-AS1:1
5.1 TRHDE-AS1:1
5.2 TRHDE-AS1:1