Transcript: TRHDE-AS1:10

Basic information

LNCipedia transcript ID: TRHDE-AS1:10 
HGNC Gene Symbol: TRHDE-AS1    
HGNC Full Gene Name: TRHDE antisense RNA 1
Ensembl Gene ID: ENSG00000236333
Ensembl Transcript ID: ENST00000549957
Location (hg38): chr12:72253508-72258240
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4733 bp
Exons: 1
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549957; ENST00000549957.1; AC087886.1-003; OTTHUMT00000405386.1; NONHSAT029459
Alternative gene names: ENSG00000236333; AC087886.1; ENSG00000236333.2; OTTHUMG00000150370.2; ENSG00000236333.3; TRHDE-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7521 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRHDE-AS1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-2:6
3.1 lnc-ZFC3H1-6:6
4.0 TRHDE-AS1:10
4.1 TRHDE-AS1:10
5.0 TRHDE-AS1:10
5.1 TRHDE-AS1:10
5.2 TRHDE-AS1:10