Transcript: TRHDE-AS1:12

Basic information

LNCipedia transcript ID: TRHDE-AS1:12 
LNCipedia gene ID: TRHDE-AS1
Location (hg38): chr12:72253554-72255741
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1401 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020843; NONHSAT029461
Alternative gene names: XLOC_010128; linc-ZFC3H1-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.892 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRHDE-AS1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-2:8
3.1 lnc-ZFC3H1-6:8
4.0 TRHDE-AS1:12
4.1 TRHDE-AS1:12
5.0 TRHDE-AS1:12
5.1 TRHDE-AS1:12
5.2 TRHDE-AS1:12