Transcript: TRHDE-AS1:5

Basic information

LNCipedia transcript ID: TRHDE-AS1:5 
LNCipedia gene ID: TRHDE-AS1
RefSeq ID: NR_026837
Location (hg38): chr12:72253507-72273509
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3955 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT029458; NR_026837; NR_026837.1
Alternative gene names: ; TRHDE-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7521 non-coding 
CPAT coding probability 99.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TRHDE-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFC3H1-6:11
4.0 TRHDE-AS1:5
4.1 TRHDE-AS1:5
5.0 TRHDE-AS1:5
5.1 TRHDE-AS1:5
5.2 TRHDE-AS1:5