Transcript: TRIM36-IT1:1

Basic information

LNCipedia transcript ID: TRIM36-IT1:1 
HGNC Gene Symbol: TRIM36-IT1    
HGNC Full Gene Name: TRIM36 intronic transcript 1
Ensembl Gene ID: ENSG00000250472
Ensembl Transcript ID: ENST00000503723
Location (hg38): chr5:115148764-115149644
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 881 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503723.1; TRIM36-IT1-001; OTTHUMT00000371858.1; NONHSAT103289
Alternative gene names: ENSG00000250472.1; TRIM36-IT1; OTTHUMG00000163154.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.5344 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM36-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGGT1B-2:1
4.0 TRIM36-IT1:1
4.1 TRIM36-IT1:1
5.0 TRIM36-IT1:1
5.1 TRIM36-IT1:1
5.2 TRIM36-IT1:1