Transcript: TRIM52-AS1:15

Basic information

LNCipedia transcript ID: TRIM52-AS1:15 
HGNC Gene Symbol: TRIM52-AS1    
HGNC Full Gene Name: TRIM52 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000248275
Ensembl Transcript ID: ENST00000507434
Location (hg38): chr5:181261222-181272307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 672 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507434.1; CTC-338M12.3-001; OTTHUMT00000371311.1
Alternative gene names: ENSG00000248275.1; CTC-338M12.3; OTTHUMG00000163002.4; TRIM52-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.7237 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:15 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM41-2:6
4.0 TRIM52-AS1:15
4.1 TRIM52-AS1:15
5.0 TRIM52-AS1:15
5.1 TRIM52-AS1:15
5.2 TRIM52-AS1:15