Transcript: TRIM52-AS1:18

Basic information

LNCipedia transcript ID: TRIM52-AS1:18 
LNCipedia gene ID: TRIM52-AS1
Location (hg38): chr5:181267824-181271701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1036 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT105945
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5708 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:18 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM41-2:15
4.0 TRIM52-AS1:18
4.1 TRIM52-AS1:18
5.0 TRIM52-AS1:18
5.1 TRIM52-AS1:18
5.2 TRIM52-AS1:18