Transcript: TRPM2-AS:4

Basic information

LNCipedia transcript ID: TRPM2-AS:4 
HGNC Gene Symbol: TRPM2-AS    
HGNC Full Gene Name: TRPM2 antisense RNA
Ensembl Gene ID: ENSG00000230061
Ensembl Transcript ID: ENST00000456880
Location (hg38): chr21:44414595-44416740
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2056 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456880; ENST00000456880.1; AP001065.2-002; OTTHUMT00000195847.1; NONHSAT082514
Alternative gene names: ENSG00000230061; AP001065.2; ENSG00000230061.1; OTTHUMG00000040845.2; ENSG00000230061.2; TRPM2-AS; TRPM2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0508 non-coding 
CPAT coding probability 14.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRPM2-AS:4 yes no no no

Available literature

  1. Ma (2017), Downregulated long non-coding RNA TRPM2-AS inhibits cisplatin resistance of non-small cell lung cancer cells via activation of p53- p66shc pathway., Eur Rev Med Pharmacol Sci
  2. Orfanelli (2015), Antisense transcription at the TRPM2 locus as a novel prognostic marker and therapeutic target in prostate cancer., Oncogene
  3. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  4. Orfanelli (2008), Identification of novel sense and antisense transcription at the TRPM2 locus in cancer., Cell Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf2-1:2
3.1 lnc-TSPEAR-2:2
4.0 TRPM2-AS:4
4.1 TRPM2-AS:4
5.0 TRPM2-AS:4
5.1 TRPM2-AS:4
5.2 TRPM2-AS:4