Transcript: TSPEAR-AS2:2

Basic information

LNCipedia transcript ID: TSPEAR-AS2:2 
LNCipedia gene ID: TSPEAR-AS2
RefSeq ID: NR_026548
Location (hg38): chr21:44517215-44518977
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 971 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026548; NR_026548.1
Alternative gene names: ; TSPEAR-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.4862 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TSPEAR-AS2:2 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf90-2:2
4.0 TSPEAR-AS2:2
4.1 TSPEAR-AS2:2
5.0 TSPEAR-AS2:2
5.1 TSPEAR-AS2:2
5.2 TSPEAR-AS2:2