Transcript: TSPEAR-AS2:3

Basic information

LNCipedia transcript ID: TSPEAR-AS2:3 
HGNC Gene Symbol: TSPEAR-AS2    
HGNC Full Gene Name: TSPEAR antisense RNA 2
Ensembl Gene ID: ENSG00000182912
Ensembl Transcript ID: ENST00000330490
Location (hg38): chr21:44517216-44518756
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 823 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000330490.3
Alternative gene names: ENSG00000182912.6; TSPEAR-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.0537 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TSPEAR-AS2:3 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TSPEAR-AS2:3
4.1 TSPEAR-AS2:3
5.0 TSPEAR-AS2:3
5.1 TSPEAR-AS2:3
5.2 TSPEAR-AS2:3