Transcript: TSPOAP1-AS1:41

Basic information

LNCipedia transcript ID: TSPOAP1-AS1:41 
LNCipedia gene ID: TSPOAP1-AS1
Location (hg38): chr17:58328940-58329665
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000265148.1|FTMT26800003412.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -219.3166 non-coding 
CPAT coding probability 12.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TSPOAP1-AS1:41 no no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer
  2. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BZRAP1-AS1:26
5.0 BZRAP1-AS1:26
5.1 TSPOAP1-AS1:10
5.2 TSPOAP1-AS1:41