Transcript: TSPOAP1-AS1:44

Basic information

LNCipedia transcript ID: TSPOAP1-AS1:44 
HGNC Gene Symbol: TSPOAP1-AS1    
HGNC Full Gene Name: TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1
Ensembl Gene ID: ENSG00000265148
Ensembl Transcript ID: ENST00000582348
Location (hg38): chr17:58337336-58351743
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 558 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582348.1; RP5-1171I10.4-010; OTTHUMT00000443995.1; NONHSAT054955
Alternative gene names: ENSG00000265148.1; RP5-1171I10.4; OTTHUMG00000178924.1; BZRAP1-AS1; ENSG00000265148.5; ; TSPOAP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.0283 non-coding 
CPAT coding probability 13.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TSPOAP1-AS1:44 yes no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer
  2. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPO-1:11
4.0 BZRAP1-AS1:21
4.1 BZRAP1-AS1:21
5.0 BZRAP1-AS1:21
5.1 TSPOAP1-AS1:37
5.2 TSPOAP1-AS1:44