Transcript: TTC28-AS1:12

Basic information

LNCipedia transcript ID: TTC28-AS1:12 
HGNC Gene Symbol: TTC28-AS1    
HGNC Full Gene Name: TTC28 antisense RNA 1
Ensembl Gene ID: ENSG00000235954
Ensembl Transcript ID: ENST00000428818
Location (hg38): chr22:27919457-27924963
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 706 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428818; ENST00000428818.1; TTC28-AS1-015; OTTHUMT00000320730.1; NONHSAT084616; ENST00000428818.5
Alternative gene names: ENSG00000235954; TTC28-AS1; ENSG00000235954.2; OTTHUMG00000150973.1; ENSG00000235954.6; KIAA1648


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0847 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTC28-AS1:12 yes no no no

Available literature

  1. Hirosawa (2001), Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSCB-1:8
3.1 lnc-HSCB-1:10
4.0 TTC28-AS1:12
4.1 TTC28-AS1:12
5.0 TTC28-AS1:12
5.1 TTC28-AS1:12
5.2 TTC28-AS1:12