Transcript: TTC28-AS1:23

Basic information

LNCipedia transcript ID: TTC28-AS1:23 
LNCipedia gene ID: TTC28-AS1
Location (hg38): chr22:27921472-27922790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1319 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT084626; FPKM1_group_20408_transcript_3
Alternative gene names: KIAA1648


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.8773 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTC28-AS1:23 no no no no

Available literature

  1. Hirosawa (2001), Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSCB-1:27
4.0 TTC28-AS1:23
4.1 TTC28-AS1:23
5.0 TTC28-AS1:23
5.1 TTC28-AS1:23
5.2 TTC28-AS1:23