Transcript: TTC28-AS1:26

Basic information

LNCipedia transcript ID: TTC28-AS1:26 
LNCipedia gene ID: TTC28-AS1
Location (hg38): chr22:27935182-27980531
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT084633
Alternative gene names: KIAA1648


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -313.3389 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTC28-AS1:26 yes no no no

Available literature

  1. Hirosawa (2001), Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSCB-1:29
4.0 TTC28-AS1:26
4.1 TTC28-AS1:26
5.0 TTC28-AS1:26
5.1 TTC28-AS1:26
5.2 TTC28-AS1:26