Transcript: TTC28-AS1:4

Basic information

LNCipedia transcript ID: TTC28-AS1:4 
LNCipedia gene ID: TTC28-AS1
RefSeq ID: NR_026962
Location (hg38): chr22:27919376-27924963
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 948 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT084607; NR_026962; NR_026962.1
Alternative gene names: KIAA1648; TTC28-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0847 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTC28-AS1:4 yes no no no

Available literature

  1. Hirosawa (2001), Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSCB-1:23
4.0 TTC28-AS1:4
4.1 TTC28-AS1:4
5.0 TTC28-AS1:4
5.1 TTC28-AS1:4
5.2 TTC28-AS1:4