Transcript: TTTY10:2

Basic information

LNCipedia transcript ID: TTTY10:2 
HGNC Gene Symbol: TTTY10    
HGNC Full Gene Name: testis-specific transcript, Y-linked 10
Ensembl Gene ID: ENSG00000229236
Ensembl Transcript ID: ENST00000439472
Location (hg38): chrY:20507254-20518407
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439472; ENST00000439472.1; TTTY10-002; OTTHUMT00000088633.1; NONHSAT139637
Alternative gene names: ENSG00000229236; TTTY10; ENSG00000229236.1; OTTHUMG00000036431.2; NCRNA00133


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.5821 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY10:2 no no no no

Available literature

  1. Zhu (2017), Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis., World J Surg Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM5D-1:2
3.1 lnc-KDM5D-3:2
4.0 TTTY10:2
4.1 TTTY10:2
5.0 TTTY10:2
5.1 TTTY10:2
5.2 TTTY10:2