Transcript: TTTY21B:5

Basic information

LNCipedia transcript ID: TTTY21B:5 
HGNC Gene Symbol: TTTY21B    
HGNC Full Gene Name: testis-specific transcript, Y-linked 21B
Ensembl Gene ID: ENSG00000237563
Ensembl Transcript ID: ENST00000421353
RefSeq ID: NR_003588
Location (hg38): chrY:6443434-6447077
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 307 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000421353; ENST00000421353.1; TTTY21B-001; OTTHUMT00000098354.1; NONHSAT139340; NR_001535; NR_003588; NR_003588.1
Alternative gene names: ENSG00000237563; TTTY21B; ENSG00000237563.1; OTTHUMG00000040983.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0188 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY21B:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPY2-2:2
3.1 lnc-TSPY2-2:1
4.0 lnc-TSPY2-2:1
4.1 lnc-TSPY2-2:1
5.0 lnc-TSPY2-2:1
5.1 TTTY21B:3
5.2 TTTY21B:5