Transcript: TTTY7:3

Basic information

LNCipedia transcript ID: TTTY7:3 
HGNC Gene Symbol: TTTY7    
HGNC Full Gene Name: testis-specific transcript, Y-linked 7
Ensembl Gene ID: ENSG00000147753
Ensembl Transcript ID: ENST00000276770
RefSeq ID: NR_001534
Location (hg38): chrY:6449468-6457906
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1367 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000276770; ENST00000276770.4; TTTY7-002; OTTHUMT00000098350.1; NONHSAT139341; NR_001534; ENST00000276770.8; NR_001534.2
Alternative gene names: ENSG00000147753; TTTY7; ENSG00000147753.5; OTTHUMG00000040981.1; ENSG00000147753.9; LINC00129; TTTY7A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0386 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY7:3 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPY2-3:3
3.1 lnc-TSPY2-3:1
4.0 TTTY7:3
4.1 TTTY7:3
5.0 TTTY7:3
5.1 TTTY7:3
5.2 TTTY7:3