Transcript: TTTY9B:3

Basic information

LNCipedia transcript ID: TTTY9B:3 
HGNC Gene Symbol: TTTY9B    
HGNC Full Gene Name: testis-specific transcript, Y-linked 9B
Ensembl Gene ID: ENSG00000131007
Ensembl Transcript ID: ENST00000545582
Location (hg38): chrY:18581206-18588712
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1501 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545582.1; TTTY9B-201; NONHSAT139584; ENST00000545582.2
Alternative gene names: ENSG00000131007.5; TTTY9B; OTTHUMG00000041950.1; ENSG00000131007.9; NCRNA00132


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3067 non-coding 
CPAT coding probability 7.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY9B:3 no no no no

Available literature

  1. Skaletsky (2003), The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSFY2-2:2
4.0 TTTY9B:3
4.1 TTTY9B:3
5.0 TTTY9B:3
5.1 TTTY9B:3
5.2 TTTY9B:3