Transcript: TUB-AS1:2

Basic information

LNCipedia transcript ID: TUB-AS1:2 
HGNC Gene Symbol: TUB-AS1    
HGNC Full Gene Name: TUB antisense RNA 1
Ensembl Gene ID: ENSG00000248332
Ensembl Transcript ID: ENST00000530466
Location (hg38): chr11:8060038-8067940
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 531 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530466; ENST00000530466.1; RP11-236J17.5-002; OTTHUMT00000385826.1; NONHSAT017824; ENST00000530466.5
Alternative gene names: ENSG00000248332; ENSG00000248332.2; RP11-236J17.5; OTTHUMG00000165692.1; ENSG00000248332.6; TUB-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.1423 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUB-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF3F-1:1
3.1 lnc-EIF3F-1:1
4.0 TUB-AS1:2
4.1 TUB-AS1:2
5.0 TUB-AS1:2
5.1 TUB-AS1:2
5.2 TUB-AS1:2