Transcript: TUB-AS1:3

Basic information

LNCipedia transcript ID: TUB-AS1:3 
HGNC Gene Symbol: TUB-AS1    
HGNC Full Gene Name: TUB antisense RNA 1
Ensembl Gene ID: ENSG00000248332
Ensembl Transcript ID: ENST00000506601
RefSeq ID: NR_120537
Location (hg38): chr11:8060038-8069373
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2021 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506601; ENST00000506601.1; RP11-236J17.5-001; OTTHUMT00000385827.1; NONHSAT017823; NR_120537; NR_120537.1
Alternative gene names: ENSG00000248332; ENSG00000248332.2; RP11-236J17.5; OTTHUMG00000165692.1; ENSG00000248332.6; TUB-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6314 non-coding 
CPAT coding probability 48.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TUB-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF3F-1:2
3.1 lnc-EIF3F-1:2
4.0 TUB-AS1:3
4.1 TUB-AS1:3
5.0 TUB-AS1:3
5.1 TUB-AS1:3
5.2 TUB-AS1:3