Transcript: TUSC8:2

Basic information

LNCipedia transcript ID: TUSC8:2 
LNCipedia gene ID: TUSC8
RefSeq ID: NR_104174
Location (hg38): chr13:44400250-44405984
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1077 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104174; NR_104174.1
Alternative gene names: XLOC_010588; TUSC8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7508 non-coding 
CPAT coding probability 4.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:2 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSC22D1-1:8
4.0 TUSC8:2
4.1 TUSC8:2
5.0 TUSC8:2
5.1 TUSC8:2
5.2 TUSC8:2