Transcript: TUSC8:6

Basic information

LNCipedia transcript ID: TUSC8:6 
HGNC Gene Symbol: TUSC8    
HGNC Full Gene Name: tumor suppressor candidate 8
Ensembl Gene ID: ENSG00000237361
Ensembl Transcript ID: ENST00000432701
Location (hg38): chr13:44400250-44405885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 978 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033505; ENST00000432701.2
Alternative gene names: ENSG00000237361.2; LINC01071; TUSC8; XLOC_010588


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7508 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:6 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSC22D1-1:9
4.0 TUSC8:6
4.1 TUSC8:6
5.0 TUSC8:6
5.1 TUSC8:6
5.2 TUSC8:6