Transcript: TUSC8:7

Basic information

LNCipedia transcript ID: TUSC8:7 
LNCipedia gene ID: TUSC8
Location (hg38): chr13:44400351-44405866
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 858 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432701; ENST00000432701.1; RP11-269C23.3-001; OTTHUMT00000044739.1
Alternative gene names: ENSG00000237361; RP11-269C23.3; ENSG00000237361.1; OTTHUMG00000016834.1; XLOC_010588


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7508 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:7 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D1-1:3
3.1 lnc-TSC22D1-1:3
4.0 TUSC8:7
4.1 TUSC8:7
5.0 TUSC8:7
5.1 TUSC8:7
5.2 TUSC8:7