Transcript: TUSC8:8

Basic information

LNCipedia transcript ID: TUSC8:8 
LNCipedia gene ID: TUSC8
Location (hg38): chr13:44400048-44405718
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1233 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022267; NONHSAT033504
Alternative gene names: XLOC_010588; linc-CCDC122-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.2301 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:8 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D1-1:4
3.1 lnc-TSC22D1-1:4
4.0 TUSC8:8
4.1 TUSC8:8
5.0 TUSC8:8
5.1 TUSC8:8
5.2 TUSC8:8