Transcript: UBOX5-AS1:4

Basic information

LNCipedia transcript ID: UBOX5-AS1:4 
HGNC Gene Symbol: UBOX5-AS1    
HGNC Full Gene Name: UBOX5 antisense RNA 1
Ensembl Gene ID: ENSG00000235958
Ensembl Transcript ID: ENST00000454019
Location (hg38): chr20:3110637-3116723
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 425 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454019; ENST00000454019.1; RP5-1187M17.7-002; OTTHUMT00000077705.1; NONHSAT078218
Alternative gene names: ENSG00000235958; RP5-1187M17.7; ENSG00000235958.1; OTTHUMG00000031730.1; UBOX5-AS1; ENSG00000235958.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.8075 non-coding 
CPAT coding probability 11.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UBOX5-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OXT-1:2
3.1 lnc-OXT-1:2
4.0 UBOX5-AS1:4
4.1 UBOX5-AS1:4
5.0 UBOX5-AS1:4
5.1 UBOX5-AS1:4
5.2 UBOX5-AS1:4